Looks like no one has come across such a situation, or people of the layout are unaware of it.
Any ways i finally got the issue resolved. Here is what happened.

Problem : Index mismatch/Correction for deeds in SMV layout.
Solution :
1. Submit hand written application to concerned SR officer ...

My mom was allotted a site by BDA in SMV layout 3rd Block and a sale deed was registered in the early part of the year 2004.Registration was done at BDA head office sub-registrar office. In april 2015 she gifted the same to me though a gift deed in Kengeri sub-registrar office.I am in the process of ...